Publications
- Maxwell W. Libbrecht, Rachel C. W. Chan, and Michael M. Hoffman; Segmentation and genome annotation algorithms for identifying chromatin state and other genomic patterns, PLoS Computational Biology, vol. 17, no. 10, e1009423, 2021.
- Rachel C. W. Chan, Matthew McNeil, Eric G. Roberts, Mickaël Mendez, Maxwell W. Libbrecht, Michael M. Hoffman; Semi-supervised segmentation and genome annotation , bioRxiv, 2020, 926923.
- Rachel C. W. Chan, Maxwell W. Libbrecht, Eric G. Roberts, Jeffrey A. Bilmes, William Stafford Noble, Michael M. Hoffman; Segway 2.0: Gaussian mixture models and minibatch training, Bioinformatics, Volume 34, Issue 4, 15 February 2018, Pages 669–671.
- Eric G. Roberts, Mickaël Mendez, Coby Viner, Mehran Karimzadeh, Rachel C. W. Chan, Rachel Ancar, Davide Chicco, Jay R. Hesselberth, Anshul Kundaje, Michael M. Hoffman; Semi-automated genome annotation using epigenomic data and Segway, bioRxiv, 2016, 080382.
As an engineering student, I developed the STROBE used in the following papers with Han Zhang, Pierre-Yves Musso, and Prof. Michael Gordon at UBC:
- Alexandria H. Jaeger, Molly Stanley, Zachary F. Weiss, Pierre-Yves Musso, Rachel C. W. Chan, Han Zhang, Damian Feldman-Kiss, Michael Gordon; A complex peripheral code for salt taste in Drosophila, eLife, Volume 7, 11 October 2018, Page e37167.
- Pierre-Yves Musso, Pierre Junca, Meghan Jelen, Damian Feldman-Kiss, Han Zhang, Rachel C. W. Chan, Michael D. Gordon. Closed-loop optogenetic activation of peripheral or central neurons modulates feeding in freely moving Drosophila, eLife, Volume 8, 19 July 2019, Page e45636.
Posters
* = presenter
Rachel C. W. Chan*, Mickaël Mendez, Jeffrey A. Bilmes, Maxwell W. Libbrecht, Michael M. Hoffman; Semi-supervised Learning in Segway, International Conference on Machine Learning (ICML), Workshop in Computational Biology, 14-15 June 2019, Long Beach, CA.
Maxwell W. Libbrecht*, Rachel C. W. Chan, Michael M. Hoffman; Segmentation and genome annotation algorithms, Machine Learning in Computational Biology (MLCB), 13-14 Dec 2019, Vancouver, BC.
Presentations
Semi-automated genome annotation using Gaussian mixture models and Segway, Canadian Undergraduate Computer Science Conference (CUCSC), 15-17 June 2017, Toronto, ON.